Nope, theyre not bonded. The fact your female is scared of your male is worrying. What exactly did this “bonder” allow while working with your bunnies? Since your female is scared, youll have to separate them. Scared bunnies will not form bonds with the bunny they are afraid of. Youll need to keep them completely separated (different rooms) for about 2 months. In this time, youll be hoping that your female forgets whatever your male did to scare her. After those 2 months, you can begin prebonding: same room, cages about 10 inches apart, swap their items every morning. Youll prebond for atleast a month. After prebonding, you can work on real bonding.
Note that rabbits can hold grudges, and since your female is already scared, there is a chance she will hold that grudge and never bond with your male.
If “scared” wasnt the right word, then I would suggest going to the prebonding step as this “bonder” clearly did not bond your rabbits at all. Prebond (cages close, same room, swap items, ect) for about a month or more. During this month+, they can alternate their free roam time, but cannot be out at the same time/no play dates. This time apart but near will help your female calm down and allow your male to adjust to sharing his territory. Dont rush prebonding. If they seem to need more than a month, thats ok; go at their pace. After prebonding, work on bonding. Bond in a neutral space (small area neither have been. many use their bathrooms). For bonding ideas, you can make another post with an update and ask for advice, update this post with an update and ask for advice, and/or read other posts here from people who are also working on bonding.
Good luck! Sorry the “bonder” wasnt as good as you thought. If they have a website or yelp or anything, it might be worth leaving a complaint review so other people who are new to rabbits dont go through this same problem