Did she ask you to pet her? Some bunnies do not like to be touched unless it is on their terms. Or should I say, some are less accepting of touching that isn’t on their terms. For example, one bunny may be OK with human-initiated contact, while another bunny may not be OK with it. However, the bunny that is not OK with it may still enjoy being pet, but only if they are doing the initiating. Does that make sense?
If I remember correctly, you adopted this pair not too long ago. They are tightly bonded and somewhat shy toward humans. From what you’re describing, Persephone is telling you she doesn’t want to be touched right now. Boxing usually doesn’t cause harm, it’s just a bunny’s way of telling someone to back off. What you can do instead is sit quietly on the floor and ignore her. Let her come to you. Put your hand on the floor, palm down. If she approaches her hand and puts her head down, that means she want you to “groom” her. You can start by petting her head and cheeks, most bunnies like that. They may or may not like their entire body stroked.
Same process with Ophelia… it just may take more time. You have to show her that you’re not going to grab her every time you come near her. Try hand feeding her pellets, etc.