What is the space like that you’ve been doing bonding sessions in, and how long have you had them together in the neutral space?
Also, how bad was the initial fighting? If there were serious injuries, then it may be very hard to re-bond them.
That said, it sounds to me like they just need more time in the neutral space and a slower transition to the non-neutral space. Usually you want buns to spend at least 48 hours in neutral space with no fighting or aggression, and lots of positive behaviors (cuddling, grooming, food sharing, litter box sharing) before you move them to a new spot.
I also think that having space is very important for all bunnies, and especially bonded pairs. If they are in a cage, they may simply be fighting because they don’t have enough space. How big is their set-up?
I probably wouldn’t go for the trio in this case. I have heard of it working, but it also can lead to three single rabbits, or the new rabbit bonding with one of your boys and having one boy left out.
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The answers provided in this discussion are for general guideline purposes only. The information is not intended to diagnose or treat your pet. Seek the advice of your veterinarian or a qualified behaviorist.