I think I know this one! E Cuniculi is a parasite. From what I’ve read, bunnies can catch it from an infected rabbit via spores (?) in the infected rabbit’s urine. Since baby bunnies are exposed to their mother’s urine, if the mother has it that is the most likely way for them to become infected. From what I’ve read, any bunny can become infected when exposed to urine of an infected bunny. Although E Cuniculi can cause serious problems, many bunnies live their whole lives hosting this parasite and have no symptoms. There are quite a few articles online about it — I imagine Funny Looking Rabbit will post with some links.
There is a blood test that will tell if a bunny has been exposed (antibody titer) if you’re curious (I had all three of mine tested when they had bloodwork done). I had mine tested mainly so I would know if E Cuniculi symptoms/complications could potentially be in there future.