There is one in Alameda that I have heard is good with rabbits, though I have never seen this vet:
Dr. Dalmasso
Alameda Pet Hospital
2275 Buena Vista
Alameda, CA
(510) 523-1626
The vet I see is Carolynn Harvey and she is very well known for being rabbit-savvy.
You just take 880 south to 238 — it’s pretty easy to get there from Alameda, about 15-20 minutes South. Just don’t attempt getting there during rush hour — otherwise you could double or triple your time. Especially getting to 238.
Dr. Carolynn Harvey
Chabot Veterinary Clinic
20877 Foothill Blvd.
Hayward, CA 94541
(510) 538-2330
As far as boarding right in Alameda, I don’t know. But in the East Bay, you can contact the House Rabbit Society Headquarters. I boarded my bunnies there once a long time ago, and it went very well. They took good care of them.
Here is the link to the House Rabbit Society Boarding page with info and rates: http://rabbit.org/rabbit-center/?page_id=791
SaveABunny.org in Marin also boards and has different boarding packages from basic (which is still good!) to full spa treatment! Here is their boarding page: http://saveabunny.org/services/boarding