I think encouraging exercise is good whatever their age. It helps in so many things. You could definitely add a 2nd floor or just something to jump up on like Beka mentioned. I think others have used things like stand alone shoe racks also. A super easy option it to add a sturdy cardboard box so she can jump up on top or hide inside it.
I bought broom handles ($2) and ran them across width of the pen. I drilled a hole in each end and wired the rod to the pen sides. The rod sits on part of the pen wire but I secured them with wire to prevent them coming off the pen sides. Then I zip-tied NIC grids across to create a level and covered that in cardboard. Will be replacing that with coroplast soon. I usually use some fabric to cover the coroplast or cardboard to give some traction.
If you put in a level you may need to put a top on the pen or at least over the part where the raised level is.