Except for the ear-scratching thing, my rabbit has the exact same problem. His rear is constantly shedding for about a year now. I have brought him to the vet multiple times and on several occasions they couldn’t find any parasites, but after I insisted they take fur samples from the balding area, sure enough they found them. (If you bring him to the vet, insist they take samples from the affected area as well) Still, I have been giving my rabbit regular doses of both revolution and advantage and he is still balding. I hear that if a rabbit has had a serious enough parasite problem, the balding can stay even when the parasites are gone.
The medication that worked the best in my many trips to the vet was an injection of an anti-parasite drug called ‘Ivermectin’–it cleared up his balding fur in a couple of weeks–I would recommend that. The reason I stopped using it was because I had to bring him to the vet once a week to get this injection and it started to become very costly and time consuming. I switched to the drops figuring I’d have the same results but so far I havn’t. The injections are only about ten dollars per visit–not bad, but I didn’t have a car to go back and forth to the vet. :/